bioinformatics algorithm Articles
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The generalised k-truncated suffix tree for time-and space-efficient searches in multiple DNA or protein sequences
Efficient searching for specific subsequences in a set of longer sequences is an important component of many bioinformatics algorithms. Generalised suffix trees and suffix arrays allow searches for a pattern of length n in time proportional to n independent of the length of the sequences, and are thus attractive for a variety of applications. Here, we present an algorithm termed the generalised ...
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Nomadic genetic algorithm for multiple sequence alignment (MSANGA)
Genetic algorithms (GA) are adaptive search procedures that try to produce a globally optimum solution for problems of huge search space. This paper speaks about a variant of the standard genetic algorithm (SGA) called nomadic genetic algorithm (NGA) which is based on the concept of 'birds of the same feather flock together'. This NGA is found to maintain the diversity of individuals in the ...
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CD Genomics Perspective: Bioinformatic Analysis for HLA Genotyping
Introduction to HLA Human leukocyte antigen (HLA) is a 3.6 Mb segment on the short arm of chromosome 6 that contains over 200 genes. It is also known as the major histocompatibility complex (MHC), and it is the most polymorphic region in the human genome, involving diverse immune reactions. HLA is divided into HLA-class I (corresponding to MHC class I) and HLA-class II (corresponding to MHC class ...
By CD Genomics
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Unraveling the Complexity of Glycans: Exploring Glycan Arrays and Their Applications
Introduction Glycans, also known as carbohydrates, are complex molecules that play a crucial role in various biological processes. They are involved in cell signaling, immune responses, and cell adhesion, among other functions. Glycan arrays have emerged as powerful tools for studying the interactions between glycans and other molecules. In this blog post, we will delve into the world of glycan ...
By CD BioGlyco.
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