CosmosID-HUB - Online Software Solution
The CosmosID-HUB is an online software solution that enables incredibly fast and easily accessible analysis of complex metagenomic data. The app gives scientists user-friendly access to numerous pipelines developed by CosmosID, including amplicon and shotgun data analysis. In addition to having access to version-controlled, validated pipelines, the software enables continuous splicing of microbiome data for novel discoveries and appreciation of important analyses such as Principle Component Analysis, Alpha Diversity, Beta Diversity as well as significance testing between groups. This means that you can begin analysing immediately interpreting your data as soon as sequencing is complete, irrespective of how much computational infrastructure you have available to you!
-
Most popular related searches
The core benefits of the CosmosID pipeline include...
The core benefits of the CosmosID pipeline includes but not limited to:
- Validated and curated databases of microbial genomes to ensure everything in the database passes QC and that there are no chimeric assemblies, misclassifications or other errors!
- Strain-level taxonomic classification with phylogenetic inference of novel organisms meaning you’re not relying on what has only been characterized in public databases. What does this mean? Should we identify a novel strain, we will simply call its nearest neighbour and teach you how to interpret the strain-level statistics we provide!
- Multi-kingdom ID & characterization with one single pipeline: Bacteria, Viruses, Phages, Fungi, Protists, Bacterial MAG’s, AMR genes & Virulence Factors.
- Precision Filters for confidence – CosmosID offers some of the most advanced machine learning filters for differentiating signal from noise, as demonstrated in various third-party challenges, meaning that the results are less impacted by false positives.
- Sample-type agnostic analysis. Whether you’re analysing stool, skin, cheese, wastewater or coral reefs, the CosmosID database is built agnostically to any specific sample type which gives you the flexibility to analyze multiple sample types across multiple projects over time and have the data continuity you need for long-term and continuous R&D!
What are the advantages of the CosmosID-HUB?
- Shotgun & Amplicon pipelines all in one place.
- Speed – get analysis in minutes once you upload your sequencing data via the upload portal.
- User friendly and intuitive interface to benefit all members of your team.
- Unlimited capacity for comparative analysis on uploaded samples.
- Indefinite access to all data uploaded onto the app providing longevity of use.
- All visualisations, charts and tables can be easily exported in a range of file formats.
- Database lookup tool to see if we have your organism of interest!
- Data organization with folders and sub-folders to keep yourself organised as you use the app over time.
- In-built SRA import tool for analyzing public data with the same pipeline and getting true data continuity.
- CosmosID-HUB: Microbiome leverages MetaCyc Pathway and GO Term databases to characterize the functional potential of the microbial community
The CosmosID-HUB has been built to be flexible and to enable access for scientists with varying degrees of bioinformatics experience in mind. Between the user-friendly interface and the Command Line Interface (CLI), the pipeline can be used in isolation or integrated with your existing workflows. So whether you just want the profiling results or complete visualizations ready for export, the CosmosID-HUB can complement what you’re already doing or what you’d like to do moving forward!
Simply visit https://app.cosmosid.com/ to access the CosmosID-HUB, where you can create a free account. No subscription is needed – just purchase credits and start your analysis. There are example datasets so you can get a feel for the functionality!
Depending on your needs:
- You can upload your own data via the upload portal
- You can import data via the SRA import tool
- You will also have access to the app with any CosmosID Metagenomic Sequencing Service.
Customer reviews
No reviews were found for CosmosID-HUB - Online Software Solution. Be the first to review!